James Phillips
Papers / Talks
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20-032020
PaperScalable molecular dynamics on CPU and GPU architectures with NAMD
- James Phillips
- David J. Hardy
- Julio Maia
- John E. Stone
- João Ribeiro
- Rafael Bernardi
- Ronak Akshay Buch
- Giacomo Fiorin
- Jérôme Hénin
- Wei Jiang
- Ryan McGreevy
- Marcelo C. R. Melo
- Brian K. Radak
- Robert Skeel
- Abhishek Singharoy
- Yi Wang
- Benoît Roux
- Aleksei Aksimentiev
- Zaida Luthey-Schulten
- Laxmikant Vasudeo Kale
- Klaus Schulten
- Christophe Chipot
- Emad Tajkhorshid
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17-122017
PaperNAMD: Scalable Molecular Dynamics Based on the Charm++ Parallel Runtime System
- Bilge Acun
- Ronak Akshay Buch
- Laxmikant Vasudeo Kale
- James Phillips
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14-172014
PaperMapping to Irregular Torus Topologies and Other Techniques for Petascale Biomolecular Simulation
- James Phillips
- Yanhua Sun
- Nikhil Jain
- Eric Bohm
- Laxmikant Vasudeo Kale
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13-432013
Paper- James Phillips
- Klaus Schulten
- Abhinav Bhatele
- Chao Mei
- Yanhua Sun
- Eric Bohm
- Laxmikant Vasudeo Kale
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12-332012
PaperOptimizing Fine-grained Communication in a Biomolecular Simulation Application on Cray XK6
- Yanhua Sun
- Gengbin Zheng
- Chao Mei
- Eric Bohm
- James Phillips
- Terry Jones
- Laxmikant Vasudeo Kale
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11-172011
Paper- Chao Mei
- Yanhua Sun
- Gengbin Zheng
- Eric Bohm
- Laxmikant Vasudeo Kale
- James Phillips
- Chris Harrison
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10-252010
PaperNAnoscale Molecular Dynamics (NAMD)
- Laxmikant Vasudeo Kale
- Abhinav Bhatele
- Eric Bohm
- James Phillips
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08-012008
PaperOvercoming Scaling Challenges in Biomolecular Simulations across Multiple Platforms
- Abhinav Bhatele
- Sameer Kumar
- Chao Mei
- James Phillips
- Gengbin Zheng
- Laxmikant Vasudeo Kale
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07-102007
PaperNAMD: A Portable and Highly Scalable Program for Biomolecular Simulations
- Abhinav Bhatele
- Sameer Kumar
- Chao Mei
- James Phillips
- Gengbin Zheng
- Laxmikant Vasudeo Kale
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07-052007
PaperBiomolecular Modeling in the Era of Petascale Computing
- Klaus Schulten
- James Phillips
- Laxmikant Vasudeo Kale
- Abhinav Bhatele
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07-022007
PaperScalable Molecular Dynamics with NAMD on Blue Gene/L
- Sameer Kumar
- Chao Huang
- Gengbin Zheng
- Eric Bohm
- Abhinav Bhatele
- James Phillips
- Hao Yu
- Laxmikant Vasudeo Kale
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05-242005
PaperBiomolecular Modeling using Parallel Supercomputers
- Laxmikant Vasudeo Kale
- Klaus Schulten
- Robert Skeel
- Glenn Martyna
- Mark Tuckerman
- James Phillips
- Sameer Kumar
- Gengbin Zheng
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05-232005
PaperScalable Molecular Dynamics with NAMD
- James Phillips
- Rosemary Braun
- Wei Wang
- James Gumbart
- Emad Tajkhorshid
- Elizabeth Villa
- Christophe Chipot
- Robert Skeel
- Laxmikant Vasudeo Kale
- Klaus Schulten
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02-072002
PaperNAMD: Biomolecular Simulation on Thousands of Processors
- James Phillips
- Gengbin Zheng
- Sameer Kumar
- Laxmikant Vasudeo Kale
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02-042002
PaperNAMD: Biomolecular Simulation on Thousands of Processors
- James Phillips
- Gengbin Zheng
- Laxmikant Vasudeo Kale
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00-062000
PaperScalable Molecular Dynamics for Large Biomolecular Systems
- Robert Brunner
- James Phillips
- Laxmikant Vasudeo Kale
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99-071999
PaperBioCoRE: A Collaboratory for Structural Biology
- Milind Bhandarkar
- Gila Budescu
- William Humphrey
- Jesus Izaguirre
- Sergei Izrailev
- Laxmikant Vasudeo Kale
- Dorina Kosztin
- Ferenc Molnar
- James Phillips
- Klaus Schulten
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99-011999
PaperApplication Performance of a Linux Cluster using Converse
- Laxmikant Vasudeo Kale
- Robert Brunner
- James Phillips
- Krishnan Varadarajan
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98-051998
PaperAvoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code
- James Phillips
- Robert Brunner
- Aritomo Shinozaki
- Milind Bhandarkar
- Neal Krawetz
- Laxmikant Vasudeo Kale
- Robert Skeel
- Klaus Schulten
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98-041998
PaperFlexibility and Interoperability in a Parallel Molecular Dynamics Code
- Robert Brunner
- Laxmikant Vasudeo Kale
- James Phillips
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98-031998
PaperNAMD2: Greater Scalability for Parallel Molecular Dynamics
- Laxmikant Vasudeo Kale
- Robert Skeel
- Milind Bhandarkar
- Robert Brunner
- Attila Gursoy
- Neal Krawetz
- James Phillips
- Aritomo Shinozaki
- Krishnan Varadarajan
- Klaus Schulten